Performance
Home
Software
Benchmark
Performance
Decoys
ZLAB
Docking sites
References
Contact
ZLAB Performance in CAPRI:
| Target | Protein Complex | Docking Category | Zlab best model | |
|---|---|---|---|---|
| 1 | HPr Kinase / HPr | U/U | Ranked 10th | |
| 2 | Rotavirus VP6 / Fab | U/U | Ranked 1st | |
| 3 | Hemagglutinin / Fab HC63 | U/B | Ranked 3rd | |
| 4 | Amylase / Camelide VHH AMD10 | U/B | Ranked 2nd | |
| 5 | Amylase / Camelide VHH AMB7 | U/B | Ranked 4th | |
| 6 | Amylase / Camelide VHH AMD9 | U/B | Ranked 9th | |
| 7 | T Cell Receptor beta chain / Exotoxin SpeA1 | U/U | Ranked 1st | |
| 8 | Nidogen-G3 / laminin | U/B | Medium | |
| 9 | Wild type LicT homodimer | U | Incorrect | |
| 10 | Trimeric TBEV Envelope Protein | U | Incorrect | |
| 11 | Cellulosome cohesin / dockerin | U/H | Acceptable | |
| 12 | Cellulosome cohesin / dockerin (unbound/bound) | U/B | High | |
| 13 | Surface Antigen 1 / Fab | U/B | High | |
| 14 | MYPT1 / PP1 | U/B | High | |
| 18 | GH11 Xylanase / TAXI | U/B | Medium | |
| 19 | Ovine prion / Fab | U/B | Medium | |
| 20 | HemK / R-1 | U/H | Incorrect | |
| 21 | Sir1p / Orc1p | U/U | Acceptable | |
| 24 | Arf1 / ArfBF | U/H | Acceptable | |
| 25 | Arf1 / ArfBF | U/B | Medium | |
| 26 | TolB / Pal | U/U | Acceptable | |
| 27 | Hip2 / Ubc9 | U/U | Medium | |
| 29 | TRM8 / TRM82 | U/B | Acceptable | |
| 30 | Rnd1 / Plexin-B1 | U/U | Incorrect | |
| 32 | BASI / Subtilisin | U/U | Incorrect | |
| 33 | Metyl transferase / RNA | H/H | Incorrect | |
| 34 | Methyl transferase / RNA | H/B | Incorrect | |
| 35 | CBM22-1 / GH10 | H/H | Incorrect | |
| 36 | CBM22-1 / GH10 | B/H | Acceptable | |
| 37 | LZ2 / Arf6 | H/U | High | |
| 39 | Centaurin-a1 / KIF13B FHA | U/B | Incorrect | |
| 40.A | Bovine trypsin / APIA | U/U | Medium | |
| 40.B | Bovine trypsin / APIA | U/U | High | |
| 41 | Colicin E9 / IM2 | U/U | Medium | |
| 42.A | TPR homodimer | H/H | Medium | |
| 42.B | TPR homodimer | H/H | Incorrect | |
References
. Target 1 ~ 7: Chen R, Tong W, Mintseris J, Li L and Weng Z. ZDOCK Predictions for the CAPRI Challenge. Proteins 52(1), 68-73.
. Target 1 ~ 7: Mendez R, Leplae R, Maria LD and Wodak SJ. Assessment of Blind Predictions of Protein-Protein Interactions: Current Status of Docking Methods. Proteins 52(1) 51-67.
. Target 8 ~19: Wiehe K, Pierce B, Mintseris J, Tong W, Anderson R, Chen R and Weng Z. ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5. Proteins 60(2), 207-21.
. Target 8 ~19: Mendez R, Leplae R, Lensink MF and Wodak SJ. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures. Proteins 60(2), 150-169.
. Target 20~27: Wiehe K, Pierce B, Tong W, Hwang H, Mintseris J and Weng Z. The Performance of ZDOCK and ZRANK in Rounds 6-11 of CAPRI. Proteins 69(4), 719-725.
. Target 20~27: Lensink MF, Mendez R and Wodak SJ. Docking and Scoring Protein Complexes: CAPRI 3rd Edition. Proteins 69(4), 704-718.
. Target 29~42: Hwang H, Vreven T, Pierce B, Hung J and Weng Z. Performance of ZDOCK and ZRANK in CAPRI round 13-19. Proteins 78(15), 3104-3110.
. Target 29~42: Lensink MF and Wodak SJ. Docking and Scoring Protein Interactions: CAPRI 2009. Protein 78(15), 3073-3084.
Comments and questions to 
.