NOTE THAT IN THE ALIGNMENTS BELOW, GAPS MOST LIKELY INDICATE
RESIDUES MISSING IN THE ELECTRON DENSITY.
Alignment: 2z0e_A against 2d1i_A
Query= 2z0e_A mol:protein length:357 Cysteine protease ATG4B
>2d1i_A mol:protein length:398 Cysteine protease APG4B
Length = 398
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/354 (99%), Positives = 353/354 (99%)
Query: 4 MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKNFPA 63
MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKNFPA
Sbjct: 6 MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKNFPA 65
Query: 64 IGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKD 123
IGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKD
Sbjct: 66 IGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKD 125
Query: 124 SYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIR 183
SYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIR
Sbjct: 126 SYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIR 185
Query: 184 RLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYV 243
RLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYV
Sbjct: 186 RLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYV 245
Query: 244 ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPATTQPAVEPTDGCFIPDESFH 303
ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDP TTQPAVEPTDGCFIPDESFH
Sbjct: 246 ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFH 305
Query: 304 CQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQ 357
CQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQ
Sbjct: 306 CQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQ 359
Alignment: 2z0e_B against 1v49_A
Query= 2z0e_B mol:protein length:129 Microtubule-associated proteins 1A/1B light c
>1v49_A mol:protein length:120 Microtubule-associated proteins 1A/1B light
c
Length = 120
Score = 244 bits (624), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 118/120 (98%), Positives = 120/120 (100%)
Query: 6 MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 65
MPSEKTFKQRR+FEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 66 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 125
SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESE+DEDGFLYMVYASQETFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120