The antigen is a trimer so there are 3 "correct answers" in this
docking problem.
NOTE THAT IN THE ALIGNMENTS BELOW, GAPS MOST LIKELY INDICATE
RESIDUES MISSING IN THE ELECTRON DENSITY.
Alignment: 2VIS_A against 1GIG_L
Query=
(210 letters)
>1GIG_L
Length = 210
Score = 432 bits (1110), Expect = e-126
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 QAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGV 60
QAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGV
Sbjct: 1 QAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGV 60
Query: 61 PARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTL 120
PARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTL
Sbjct: 61 PARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTL 120
Query: 121 FPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSY 180
FPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSY
Sbjct: 121 FPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSY 180
Query: 181 LTLTARAWERHSSYSCQVTHEGHTVEKSLS 210
LTLTARAWERHSSYSCQVTHEGHTVEKSLS
Sbjct: 181 LTLTARAWERHSSYSCQVTHEGHTVEKSLS 210
Alignment: 2VIS_B against 1GIG_H
Query=
(221 letters)
>1GIG_H
Length = 221
Score = 453 bits (1166), Expect = e-132
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 QVQLKESGPGLVAPSQSLSITCTVSGFLLISNGVHWVRQPPGKGLEWLGVIWAGGNTNYN 60
QVQLKESGPGLVAPSQSLSITCTVSGFLLISNGVHWVRQPPGKGLEWLGVIWAGGNTNYN
Sbjct: 1 QVQLKESGPGLVAPSQSLSITCTVSGFLLISNGVHWVRQPPGKGLEWLGVIWAGGNTNYN 60
Query: 61 SALMSRVSISKDNSKSQVFLKMKSLQTDDTAMYYCARDFYDYDVFYYAMDYWGQGTSVTV 120
SALMSRVSISKDNSKSQVFLKMKSLQTDDTAMYYCARDFYDYDVFYYAMDYWGQGTSVTV
Sbjct: 61 SALMSRVSISKDNSKSQVFLKMKSLQTDDTAMYYCARDFYDYDVFYYAMDYWGQGTSVTV 120
Query: 121 SSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQ 180
SSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQ
Sbjct: 121 SSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQ 180
Query: 181 SDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP 221
SDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP
Sbjct: 181 SDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP 221
Alignment: 2VIS_C against 2VIU_A
Query=
(267 letters)
>2VIU_A
Length = 320
Score = 560 bits (1442), Expect = e-164
Identities = 267/267 (100%), Positives = 267/267 (100%)
Query: 1 VQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDV 60
VQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDV
Sbjct: 35 VQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDV 94
Query: 61 PDYASLRSLVASSGTLEFITEGFTWTGVIQNGGSNACKRGPGSGFFSRLNWLTKSGSTYP 120
PDYASLRSLVASSGTLEFITEGFTWTGVIQNGGSNACKRGPGSGFFSRLNWLTKSGSTYP
Sbjct: 95 PDYASLRSLVASSGTLEFITEGFTWTGVIQNGGSNACKRGPGSGFFSRLNWLTKSGSTYP 154
Query: 121 VLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPW 180
VLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPW
Sbjct: 155 VLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPW 214
Query: 181 VRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECI 240
VRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECI
Sbjct: 215 VRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECI 274
Query: 241 TPNGSIPNDKPFQNVNKITYGACPKYV 267
TPNGSIPNDKPFQNVNKITYGACPKYV
Sbjct: 275 TPNGSIPNDKPFQNVNKITYGACPKYV 301
Score = 15.8 bits (29), Expect = 1.3
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 235 CISECITPNGSI 246
C+ PNG++
Sbjct: 6 CLGHHAVPNGTL 17