NOTE THAT IN THE ALIGNMENTS BELOW, GAPS MOST LIKELY INDICATE
RESIDUES MISSING IN THE ELECTRON DENSITY. 



Query: 2fd6 chain H

>pdb|2FAT|H Related structures Chain H, An Anti-Urokinase Plasminogen Activator Receptor (Upar) Antibody: Crystal Structure And Binding Epitope
Length=214

 Score =  368 bits (945),  Expect = 5e-103, Method: Composition-based stats.
 Identities = 213/213 (100%), Positives = 213/213 (100%), Gaps = 0/213 (0%)

Query  1    GVKLQQSGPEVVKPGASVKISCKASGYSFTNFYIHWVKQRPGQGLEWIGWIFHGSDNTEY  60
            GVKLQQSGPEVVKPGASVKISCKASGYSFTNFYIHWVKQRPGQGLEWIGWIFHGSDNTEY
Sbjct  1    GVKLQQSGPEVVKPGASVKISCKASGYSFTNFYIHWVKQRPGQGLEWIGWIFHGSDNTEY  60

Query  61   NEKFKDKATLTADTSSSTAYMQLSSLTSEDSAVYFCARWGPHWYFDVWGQGTTVTVSSAK  120
            NEKFKDKATLTADTSSSTAYMQLSSLTSEDSAVYFCARWGPHWYFDVWGQGTTVTVSSAK
Sbjct  61   NEKFKDKATLTADTSSSTAYMQLSSLTSEDSAVYFCARWGPHWYFDVWGQGTTVTVSSAK  120

Query  121  TTPPSVYPLAPGNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSS  180
            TTPPSVYPLAPGNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSS
Sbjct  121  TTPPSVYPLAPGNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSS  180

Query  181  VTVPSSTWPSETVTCNVAHPASSTKVDKKIAAA  213
            VTVPSSTWPSETVTCNVAHPASSTKVDKKIAAA
Sbjct  181  VTVPSSTWPSETVTCNVAHPASSTKVDKKIAAA  213

Query: 2fd6 chain L

>pdb|2FAT|L Related structures Chain L, An Anti-Urokinase Plasminogen Activator$Antibody: Crystal Structure And Binding Epitope
Length=212

 Score =  367 bits (941),  Expect = 2e-102, Method: Composition-based stats.
 Identities = 211/211 (100%), Positives = 211/211 (100%), Gaps = 0/211 (0%)

Query  1    DIVLTQSPDITAASLGQKVTITCSASSSVSYMHWYQQKSGTSPKPWIFEISKLASGVPAR  60
            DIVLTQSPDITAASLGQKVTITCSASSSVSYMHWYQQKSGTSPKPWIFEISKLASGVPAR
Sbjct  1    DIVLTQSPDITAASLGQKVTITCSASSSVSYMHWYQQKSGTSPKPWIFEISKLASGVPAR  60

Query  61   FSGSGSGTSYSLTISSMEAEDAAIYYCQQWNYPFTFGGGTKLEIKRADAAPTVSIFPPSS  120
            FSGSGSGTSYSLTISSMEAEDAAIYYCQQWNYPFTFGGGTKLEIKRADAAPTVSIFPPSS
Sbjct  61   FSGSGSGTSYSLTISSMEAEDAAIYYCQQWNYPFTFGGGTKLEIKRADAAPTVSIFPPSS  120

Query  121  EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT  180
            EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT
Sbjct  121  EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT  180

Query  181  KDEYERHNSYTCEATHKTSTSPIVKSFNRNE  211
            KDEYERHNSYTCEATHKTSTSPIVKSFNRNE
Sbjct  181  KDEYERHNSYTCEATHKTSTSPIVKSFNRNE  211

Query: 2fd6 chain U

>pdb|1YWH|A Related structures Chain A, Crystal Structure Of Urokinase Plasminogen Activator Receptor
Length=313

 Score =  476 bits (1226),  Expect = 2e-135, Method: Composition-based stats.
 Identities = 274/275 (99%), Positives = 274/275 (99%), Gaps = 0/275 (0%)

Query  2    LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTG  61
            LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTG
Sbjct  1    LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTG  60

Query  62   LKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEE  121
            LKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEE
Sbjct  61   LKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEE  120

Query  122  QCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGP  181
            QCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGP
Sbjct  121  QCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGP  180

Query  182  ILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRG  241
            ILELENLPQNGRQCYSCKG STHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRG
Sbjct  181  ILELENLPQNGRQCYSCKGQSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRG  240

Query  242  CATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPD  276
            CATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPD
Sbjct  241  CATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPD  275