NOTE THAT IN THE ALIGNMENTS BELOW, GAPS MOST LIKELY INDICATE
RESIDUES MISSING IN THE ELECTRON DENSITY.
Alignment: 2b4j_AB against 1biz_AB
Query= 2b4j_A mol:protein length:166 Integrase (IN)
>1biz_A mol:protein length:166 HIV-1 INTEGRASE
Length = 166
Score = 341 bits (875), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 165/166 (99%), Positives = 165/166 (99%)
Query: 1 GSHMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAG 60
GSHMHGQVD SPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAG
Sbjct: 1 GSHMHGQVDSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAG 60
Query: 61 RWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVR 120
RWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVR
Sbjct: 61 RWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVR 120
Query: 121 DQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQTKE 166
DQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQTKE
Sbjct: 121 DQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQTKE 166
Query= 2b4j_B mol:protein length:166 Integrase (IN)
>1biz_B mol:protein length:166 HIV-1 INTEGRASE
Length = 166
Score = 341 bits (875), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 165/166 (99%), Positives = 165/166 (99%)
Query: 1 GSHMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAG 60
GSHMHGQVD SPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAG
Sbjct: 1 GSHMHGQVDSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAG 60
Query: 61 RWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVR 120
RWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVR
Sbjct: 61 RWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVR 120
Query: 121 DQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQTKE 166
DQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQTKE
Sbjct: 121 DQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQTKE 166
Alignment: 2b4j_C against 1z9e_A
Query= 2b4j_C mol:protein length:98 PC4 and SFRS1 interacting protein
>1z9e_A mol:protein length:127 PC4 and SFRS1 interacting protein 2
Length = 127
Score = 200 bits (509), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 GSSMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIR 60
GSSMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIR
Sbjct: 1 GSSMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIR 60
Query: 61 RFKVSQVIMEKSTMLYNKFKNMFLVGEGDSVITQVLNK 98
RFKVSQVIMEKSTMLYNKFKNMFLVGEGDSVITQVLNK
Sbjct: 61 RFKVSQVIMEKSTMLYNKFKNMFLVGEGDSVITQVLNK 98