NOTE THAT IN THE ALIGNMENTS BELOW, GAPS MOST LIKELY INDICATE
RESIDUES MISSING IN THE ELECTRON DENSITY.
Alignment: 1zhh_A against 1jx6_A
Query= 1zhh_A mol:protein length:344 Autoinducer 2-binding periplasmic protein lux
>1jx6_A mol:protein length:342 LUXP PROTEIN
Length = 342
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/342 (100%), Positives = 342/342 (100%)
Query: 3 VLNGYWGYQEFLDEFPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWV 62
VLNGYWGYQEFLDEFPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWV
Sbjct: 1 VLNGYWGYQEFLDEFPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWV 60
Query: 63 RNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKF 122
RNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKF
Sbjct: 61 RNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKF 120
Query: 123 VEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSV 182
VEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSV
Sbjct: 121 VEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSV 180
Query: 183 LYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKATKQSGYDAAKASLAKHPDVDFIYA 242
LYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKATKQSGYDAAKASLAKHPDVDFIYA
Sbjct: 181 LYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKATKQSGYDAAKASLAKHPDVDFIYA 240
Query: 243 CSTDVALGAVDALAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMAEAI 302
CSTDVALGAVDALAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMAEAI
Sbjct: 241 CSTDVALGAVDALAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMAEAI 300
Query: 303 KWDLEDKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN 344
KWDLEDKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN
Sbjct: 301 KWDLEDKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN 342
Alignment: 1zhh_B against 2hje_A
Query= 1zhh_B mol:protein length:242 Autoinducer 2 sensor kinase/phosphatase luxQ
>2hje_A mol:protein length:221 Autoinducer 2 sensor kinase/phosphatase
luxQ
Length = 221
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/220 (99%), Positives = 220/220 (100%)
Query: 16 TKQQTSALIHNIFDSHFAAIQIHHDSNSKSEVIRDFYTDRDTDVLNFFFLSIDQSDPSHT 75
+KQQTSALIHNIFDSHFAAIQIHHDSNSKSEVIRDFYTDRDTDVLNFFFLSIDQSDPSHT
Sbjct: 2 SKQQTSALIHNIFDSHFAAIQIHHDSNSKSEVIRDFYTDRDTDVLNFFFLSIDQSDPSHT 61
Query: 76 PEFRFLTDHKGIIWDDGNAHFYGVNDLILDSLANRVSFSNNWYYINVMTSIGSRHMLVRR 135
PEFRFLTDHKGIIWDDGNAHFYGVNDLILDSLANRVSFSNNWYYINVMTSIGSRHMLVRR
Sbjct: 62 PEFRFLTDHKGIIWDDGNAHFYGVNDLILDSLANRVSFSNNWYYINVMTSIGSRHMLVRR 121
Query: 136 VPILDPSTGEVLGFSFNAVVLDNNFALMEKLKSESNVDNVVLVANSVPLANSLIGDEPYN 195
VPILDPSTGEVLGFSFNAVVLDNNFALMEKLKSESNVDNVVLVANSVPLANSLIGDEPYN
Sbjct: 122 VPILDPSTGEVLGFSFNAVVLDNNFALMEKLKSESNVDNVVLVANSVPLANSLIGDEPYN 181
Query: 196 VADVLQRKSSDKRLDKLLVIETPIVVNAVTTELCLLTVQD 235
VADVLQRKSSDKRLDKLLVIETPIVVNAVTTELCLLTVQD
Sbjct: 182 VADVLQRKSSDKRLDKLLVIETPIVVNAVTTELCLLTVQD 221