The benchmark cases 1GRN_A:B, 1WQ1_G:R might be considered redundant and the choice is left to the user.

1GRN_A and 1WQ1_R fall into the same SCOP Family. 1GRN_B and 1WQ1_G fall into the same SCOP Superfamily
but different Families. The sequence identities for the corresponding sequences are low. The rasmol files with aligned
complexes are here:

align_1grn_1wq1.ras


Alignment: 1WQ1_G against 1WER_
Query= 
         (320 letters)

>1WER_
          Length = 324

 Score =  627 bits (1617), Expect = 0.0
 Identities = 320/320 (100%), Positives = 320/320 (100%)

Query: 1   MPEEEYSEFKELILQKELHVVYALSHVCGQDRTLLASILLRIFLHEKLESLLLCTLNDRE 60
           MPEEEYSEFKELILQKELHVVYALSHVCGQDRTLLASILLRIFLHEKLESLLLCTLNDRE
Sbjct: 1   MPEEEYSEFKELILQKELHVVYALSHVCGQDRTLLASILLRIFLHEKLESLLLCTLNDRE 60

Query: 61  ISMEDEATTLFRATTLASTLMEQYMKATATQFVHHALKDSILKIMESKQSCELSPSKLEK 120
           ISMEDEATTLFRATTLASTLMEQYMKATATQFVHHALKDSILKIMESKQSCELSPSKLEK
Sbjct: 61  ISMEDEATTLFRATTLASTLMEQYMKATATQFVHHALKDSILKIMESKQSCELSPSKLEK 120

Query: 121 NEDVNTNLTHLLNILSELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNTTMRTRVVS 180
           NEDVNTNLTHLLNILSELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNTTMRTRVVS
Sbjct: 121 NEDVNTNLTHLLNILSELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNTTMRTRVVS 180

Query: 181 GFVFLRLICPAILNPRMFNIISDSPSPIAARTLILVAKSVQNLANLVEFGAKEPYMEGVN 240
           GFVFLRLICPAILNPRMFNIISDSPSPIAARTLILVAKSVQNLANLVEFGAKEPYMEGVN
Sbjct: 181 GFVFLRLICPAILNPRMFNIISDSPSPIAARTLILVAKSVQNLANLVEFGAKEPYMEGVN 240

Query: 241 PFIKSNKHRMIMFLDELGNVPELPDTTEHSRTDLSRDLAALHEICVAHSDELRTLSNERG 300
           PFIKSNKHRMIMFLDELGNVPELPDTTEHSRTDLSRDLAALHEICVAHSDELRTLSNERG
Sbjct: 241 PFIKSNKHRMIMFLDELGNVPELPDTTEHSRTDLSRDLAALHEICVAHSDELRTLSNERG 300

Query: 301 AQQHVLKKLLAITELLQQKQ 320
           AQQHVLKKLLAITELLQQKQ
Sbjct: 301 AQQHVLKKLLAITELLQQKQ 320


Alignment: 1WQ1_R against 6Q21_D
Query= 
         (166 letters)

>6Q21_D
          Length = 171

 Score =  333 bits (853), Expect = 1e-96
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
           MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
           QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

Query: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
           AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166