NOTE THAT IN THE ALIGNMENTS BELOW, GAPS MOST LIKELY INDICATE
RESIDUES MISSING IN THE ELECTRON DENSITY.
Query: 1jmo chain A
>pdb|1JMJ|A Related structures Chain A, Crystal Structure Of Native Heparin Cofactor
Ii
Length=480
Score = 971 bits (2509), Expect = 0.0, Method: Composition-based stats.
Identities = 480/480 (100%), Positives = 480/480 (100%), Gaps = 0/480 (0%)
Query 1 GSKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLLPADFHKENTVTNDWIPEGEEDDDY 60
GSKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLLPADFHKENTVTNDWIPEGEEDDDY
Sbjct 1 GSKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLLPADFHKENTVTNDWIPEGEEDDDY 60
Query 61 LDLEKIFSEDDDYIDIVDSLSVSPTDSDVSAGNILQLFHGKSRIQRLNILNAKFAFNLYR 120
LDLEKIFSEDDDYIDIVDSLSVSPTDSDVSAGNILQLFHGKSRIQRLNILNAKFAFNLYR
Sbjct 61 LDLEKIFSEDDDYIDIVDSLSVSPTDSDVSAGNILQLFHGKSRIQRLNILNAKFAFNLYR 120
Query 121 VLKDQVNTFDNIFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYEITTIH 180
VLKDQVNTFDNIFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYEITTIH
Sbjct 121 VLKDQVNTFDNIFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYEITTIH 180
Query 181 NLFRKLTHRLFRRNFGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFI 240
NLFRKLTHRLFRRNFGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFI
Sbjct 181 NLFRKLTHRLFRRNFGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFI 240
Query 241 SKTNNHIMKLTKGLIKDALENIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNERE 300
SKTNNHIMKLTKGLIKDALENIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNERE
Sbjct 241 SKTNNHIMKLTKGLIKDALENIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNERE 300
Query 301 VVKVSMMQTKGNFLAANDQELDCDILQLEYVGGISMLIVVPHKMSGMKTLEAQLTPRVVE 360
VVKVSMMQTKGNFLAANDQELDCDILQLEYVGGISMLIVVPHKMSGMKTLEAQLTPRVVE
Sbjct 301 VVKVSMMQTKGNFLAANDQELDCDILQLEYVGGISMLIVVPHKMSGMKTLEAQLTPRVVE 360
Query 361 RWQKSMTNRTREVLLPKFKLEKNYNLVESLKLMGIRMLFDKNGNMAGISDQRIAIDLFKH 420
RWQKSMTNRTREVLLPKFKLEKNYNLVESLKLMGIRMLFDKNGNMAGISDQRIAIDLFKH
Sbjct 361 RWQKSMTNRTREVLLPKFKLEKNYNLVESLKLMGIRMLFDKNGNMAGISDQRIAIDLFKH 420
Query 421 QGTITVNEEGTQATTVTTVGFMPLSTQVRFTVDRPFLFLIYEHRTSCLLFMGRVANPSRS 480
QGTITVNEEGTQATTVTTVGFMPLSTQVRFTVDRPFLFLIYEHRTSCLLFMGRVANPSRS
Sbjct 421 QGTITVNEEGTQATTVTTVGFMPLSTQVRFTVDRPFLFLIYEHRTSCLLFMGRVANPSRS 480
Query: 1jmo chain H
>pdb|2CN0|H Related structures Chain H, Complex Of Recombinant Human Thrombin With
A Designed Inhibitor
Length=257
Score = 546 bits (1406), Expect = 3e-156, Method: Composition-based stats.
Identities = 255/256 (99%), Positives = 256/256 (100%), Gaps = 0/256 (0%)
Query 3 VEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLV 62
VEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLV
Sbjct 2 VEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLV 61
Query 63 RIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLP 122
RIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLP
Sbjct 62 RIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLP 121
Query 123 DRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRI 182
DRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRI
Sbjct 122 DRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRI 181
Query 183 TDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYT 242
TDNMFCAGYKPDEGKRGDACEGD+GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYT
Sbjct 182 TDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYT 241
Query 243 HVFRLKKWIQKVIDQF 258
HVFRLKKWIQKVIDQF
Sbjct 242 HVFRLKKWIQKVIDQF 257
Query: 1jmo chain L
>pdb|2CN0|L Related structures Chain L, Complex Of Recombinant Human Thrombin With
A Designed Inhibitor
Length=28
Score = 49.3 bits (116), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/27 (100%), Positives = 27/27 (100%), Gaps = 0/27 (0%)
Query 21 DCGLRPLFEKKSLEDKTERELLESYID 47
DCGLRPLFEKKSLEDKTERELLESYID
Sbjct 2 DCGLRPLFEKKSLEDKTERELLESYID 28