This benchmark case is special. Because the alignments below align only the residues visible in the
electron densities, you cannot see that there is a stretch of 10 residues missing in BOTH bound and unbound
structures 1F34_B and 1F32_A. We recommend modeling them in for best docking results.

NOTE THAT IN THE ALIGNMENTS BELOW, GAPS MOST LIKELY INDICATE
RESIDUES MISSING IN THE ELECTRON DENSITY.

Alignment: 1F34_A against 4PEP_
Query= 
         (325 letters)

>4PEP_
          Length = 326

 Score =  654 bits (1686), Expect = 0.0
 Identities = 324/326 (99%), Positives = 325/326 (99%), Gaps = 1/326 (0%)

Query: 1   IGDEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDD 60
           IGDEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDD
Sbjct: 1   IGDEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDD 60

Query: 61  SSTFEAT-QELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGI 119
           SSTFEAT QELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGI
Sbjct: 61  SSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGI 120

Query: 120 LGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLN 179
           LGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLN
Sbjct: 121 LGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLN 180

Query: 180 WVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN 239
           WVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN
Sbjct: 181 WVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN 240

Query: 240 SDGEMVISCSSIDSLPDIVFTINGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWI 299
           SDGEMVISCSSIDSLPDIVFTI+GVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWI
Sbjct: 241 SDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWI 300

Query: 300 LGDVFIRQYYTVFDRANNKVGLAPVA 325
           LGDVFIRQYYTVFDRANNKVGLAPVA
Sbjct: 301 LGDVFIRQYYTVFDRANNKVGLAPVA 326


Alignment: 1F34_B against 1F32_A
Query= 
         (138 letters)

>1F32_A
          Length = 127

 Score =  264 bits (674), Expect = 4e-76
 Identities = 127/137 (92%), Positives = 127/137 (92%), Gaps = 10/137 (7%)

Query: 2   FLFSMSTGPFICTVKDNQVFVANLPWTMLEGDDIQVGKEFAARVEDCTNVKHDMAPTCTK 61
           FLFSMSTGPFICTVKDNQVFVANLPWTMLEGDDIQVGKEFAARVEDCTNVKHDMAPTCTK
Sbjct: 1   FLFSMSTGPFICTVKDNQVFVANLPWTMLEGDDIQVGKEFAARVEDCTNVKHDMAPTCTK 60

Query: 62  PPPFCGPQDMKMFNFVGCSVLGNKLFIDQKYVRDLTAKDHAEVQTFREKIAAFEEQQENQ 121
           PPPFCGPQDMKMFNFVGCSVLGNKLFIDQKYVRDLTAKDHAEVQTFREKIAAFEEQ    
Sbjct: 61  PPPFCGPQDMKMFNFVGCSVLGNKLFIDQKYVRDLTAKDHAEVQTFREKIAAFEEQ---- 116

Query: 122 PPAGGLSPPPPPSFCTV 138
                 SPPPPPSFCTV
Sbjct: 117 ------SPPPPPSFCTV 127